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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
10
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
113
Transcription
10
DNA binding
7
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
9
control
1
RNA binding protein
1
transcription factor
Date released
66
August, 2021
47
September, 2023
8
February, 2021
5
April, 2019
5
October, 2019
3
December, 2019
3
May, 2023
2
July, 2019
Available data
62
txt
11
bam
10
tsv
5
csv
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
139
Homo sapiens
Biosample type
134
tissue
primary cell
5
cell line
Organ
254
liver
156
pancreas
139
kidney
121
heart
108
connective tissue
92
bone element
65
adipose tissue
60
brain
49
epithelium
49
eye
39
musculature of body
29
blood vessel
29
vasculature
26
limb
19
lung
13
artery
12
nerve
8
embryo
8
skeleton
8
spleen
7
blood
7
bodily fluid
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
92
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
104
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
23
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
assay_title!
pCHi-C
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
139 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
64
49
7
6
1
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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cell line
HEK293T
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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