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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
2
ATAC-seq
2
Capture-C
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
4
3D chromatin structure
3
DNA accessibility
2
Transcription
Date released
4
July, 2019
2
August, 2021
2
February, 2023
2
May, 2021
1
May, 2022
Available data
416
bam
404
fastq
232
bigWig
184
bed narrowPeak
159
tsv
153
zippedFastqFolder
152
tagAlign
76
txt
44
bigBed narrowPeak
40
bed broadPeak
18
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
17
hic
15
bedpe bed3+
11
bed bed3+
10
bed bed3
8
csv
6
bed bedgraph
4
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
11
Homo sapiens
Biosample type
6
primary cell
4
in vitro differentiated cells
1
tissue
Organ
5
connective tissue
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
liver
1
musculature of body
Project
11
AMP
Genome assembly (visualization)
GRCh38
242
hg19
Lab
7
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
assembly!
GRCh38
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
11 results
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Clear Filters
Hi-C
ATAC-seq
Capture-C
total RNA-seq
snATAC-seq
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
preadipocyte
1
tissue
skeletal muscle tissue
1
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