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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
Hi-C
2
Capture-C
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Date released
4
February, 2023
4
July, 2019
2
August, 2021
2
May, 2021
1
May, 2022
Available data
432
bam
406
fastq
239
bigWig
185
bed narrowPeak
169
tsv
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
22
hic
20
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
13
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
cool
1
bedpe
1
vcf
Organism
13
Homo sapiens
Biosample type
6
in vitro differentiated cells
6
primary cell
1
tissue
Organ
7
connective tissue
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
liver
1
musculature of body
Project
13
AMP
Genome assembly (visualization)
GRCh38
248
hg19
Lab
9
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
assembly!
GRCh38
files.file_type!
cool
BIOSAMPLE
ASSAY
13 results
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Clear Filters
ATAC-seq
Hi-C
Capture-C
total RNA-seq
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
tissue
skeletal muscle tissue
1
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