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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
ChIP-seq
1
DNase-seq
Assay category
19
DNA methylation
17
DNA binding
1
DNA accessibility
Target of assay
13
transcription factor
4
histone
4
histone modification
3
broad histone mark
2
RNA binding protein
1
narrow histone mark
Date released
15
July, 2019
14
November, 2017
6
August, 2017
2
October, 2019
Available data
432
bam
406
fastq
239
bigWig
185
bed narrowPeak
169
tsv
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
22
hic
20
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
13
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
37
Homo sapiens
Biosample type
14
cell line
14
primary cell
9
tissue
Organ
16
liver
8
epithelium
4
kidney
3
musculature of body
3
vasculature
2
blood vessel
2
brain
2
heart
2
pancreas
2
vein
1
connective tissue
1
eye
1
pericardium
Project
37
AMP
Genome assembly (visualization)
GRCh38
281
hg19
Lab
37
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_title!
pCHi-C
assembly!
GRCh38
BIOSAMPLE
ASSAY
37 results
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RRBS
ChIP-seq
DNase-seq
cell line
HepG2
14
primary cell
skeletal muscle myoblast
1
1
1
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
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