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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
4
DNA accessibility
Date released
57
August, 2021
7
February, 2023
7
May, 2022
5
February, 2021
1
October, 2022
Available data
432
bam
406
fastq
239
bigWig
185
bed narrowPeak
167
tsv
153
zippedFastqFolder
152
tagAlign
77
txt
44
bigBed narrowPeak
40
bed broadPeak
22
hic
20
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
13
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
76
Homo sapiens
Biosample type
73
tissue
3
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
77
AMP
Genome assembly (visualization)
4
hg19
Lab
57
Katalin Susztak, Upenn
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
1
inconsistent ontology term
assay_title!
pCHi-C
RNA microarray
assembly!
GRCh38
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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