Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
34
ATAC-seq
19
total RNA-seq
18
snATAC-seq
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
70
DNA binding
52
DNA accessibility
19
Transcription
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
83
May, 2021
24
May, 2022
23
February, 2023
16
January, 2021
Available data
48
bed narrowPeak
40
bigWig
24
bam
24
fastq
6
txt
2
bed bed3+
Organism
146
Homo sapiens
Biosample type
51
tissue
47
in vitro differentiated cells
43
primary cell
5
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
Project
107
AMP
39
T1D
Genome assembly (visualization)
238
hg19
GRCh38
Lab
1054
AMP-T2D consortium
314
Klaus Kaestner, Upenn
146
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
assay_title!
pCHi-C
assembly!
GRCh38
BIOSAMPLE
ASSAY
146 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
11
6
pancreas
1
4
in vitro differentiated cells
embryonic stem cell
37
5
5
primary cell
CD8-positive, alpha-beta T cell
33
2
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
Download