Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
21
ChIP-seq
3
Hi-C
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
21
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
20
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
6
May, 2019
4
July, 2019
3
February, 2020
2
February, 2021
2
June, 2019
2
March, 2020
1
February, 2023
1
October, 2019
Available data
95
tsv
20
bam
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
tagAlign
1
bed narrowPeak
1
bigWig
Organism
124
Homo sapiens
Biosample type
119
tissue
3
primary cell
2
cell line
Organ
310
pancreas
257
liver
230
epithelium
147
kidney
124
heart
113
connective tissue
92
bone element
67
brain
65
adipose tissue
51
eye
44
vasculature
42
blood vessel
42
musculature of body
26
limb
19
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
8
embryo
8
skeleton
8
spleen
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
124
AMP
Genome assembly (visualization)
GRCh38
188
hg19
Lab
124
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
pCHi-C
assembly!
GRCh38
BIOSAMPLE
ASSAY
124 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
tissue
heart left ventricle
18
7
1
1
2
heart right ventricle
17
2
1
right cardiac atrium
18
1
left cardiac atrium
18
aortic valve
4
+ See 10 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
Download