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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
27
ChIP-seq
8
snATAC-seq
3
Hi-C
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
1
ATAC-seq
Assay category
96
Transcription
27
DNA binding
9
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
26
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
8
January, 2021
6
May, 2019
4
July, 2019
3
February, 2020
3
January, 2019
3
November, 2018
2
February, 2021
2
June, 2019
2
March, 2020
1
February, 2023
1
January, 2018
1
October, 2019
Available data
95
tsv
26
bam
6
fastq
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
2
tagAlign
1
bed narrowPeak
Organism
139
Homo sapiens
Biosample type
119
tissue
11
primary cell
9
cell line
Organ
310
pancreas
257
liver
230
epithelium
147
kidney
124
heart
113
connective tissue
92
bone element
67
brain
65
adipose tissue
51
eye
44
vasculature
42
blood vessel
42
musculature of body
26
limb
19
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
8
embryo
8
skeleton
8
spleen
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
131
AMP
8
T1D
Genome assembly (visualization)
GRCh38
243
hg19
Lab
131
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
pCHi-C
assembly!
GRCh38
BIOSAMPLE
ASSAY
139 results
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single cell RNA-seq
ChIP-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
WGBS
ATAC-seq
tissue
heart left ventricle
18
7
1
1
2
heart right ventricle
17
2
1
right cardiac atrium
18
1
left cardiac atrium
18
aortic valve
4
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primary cell
peripheral blood mononuclear cell
8
cardiac fibroblast
2
1
cell line
GM12878
6
1
smooth muscle cell of the coronary artery
2
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