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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
28
ATAC-seq
24
ChIP-seq
22
total RNA-seq
pCHi-C
3
Hi-C
3
RRBS
2
WGBS
Assay category
115
Transcription
28
DNA accessibility
24
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
21
control
3
histone
3
histone modification
3
narrow histone mark
Date released
92
August, 2021
32
February, 2023
18
October, 2019
11
April, 2019
6
May, 2019
5
July, 2019
4
February, 2020
3
June, 2019
2
February, 2021
2
March, 2020
Available data
100
tsv
28
bed narrowPeak
21
bam
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
3
hic
2
tagAlign
1
bigWig
Organism
175
Homo sapiens
Biosample type
168
tissue
5
primary cell
2
cell line
Organ
310
pancreas
257
liver
230
epithelium
147
kidney
124
heart
113
connective tissue
92
bone element
67
brain
65
adipose tissue
51
eye
44
vasculature
42
blood vessel
42
musculature of body
26
limb
19
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
8
embryo
8
skeleton
8
spleen
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
175
AMP
Genome assembly (visualization)
GRCh38
222
hg19
Lab
175
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
pCHi-C
assembly!
GRCh38
BIOSAMPLE
ASSAY
175 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
RRBS
WGBS
tissue
heart left ventricle
18
7
1
1
2
heart right ventricle
17
2
1
right cardiac atrium
18
1
left cardiac atrium
18
retina
15
3
+ See 13 more…
primary cell
cardiac fibroblast
2
1
retinal pigment epithelial cell
1
1
cell line
smooth muscle cell of the coronary artery
2
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