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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
35
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
43
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
31
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
113
bam
91
bed narrowPeak
90
bigWig
83
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
121
Homo sapiens
Biosample type
121
tissue
Organ
787
liver
712
pancreas
661
connective tissue
488
adipose tissue
384
heart
331
kidney
281
brain
281
epithelium
234
vasculature
229
blood vessel
141
artery
121
limb
86
musculature of body
74
bone element
69
blood
69
bodily fluid
57
eye
43
nerve
31
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
121
AMP
Genome assembly (visualization)
95
GRCh38
95
hg19
Lab
121
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_title!
pCHi-C
audit.ERROR.category!
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
1
4
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