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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
86
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
472
Transcription
86
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
446
February, 2021
57
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
6
November, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
533
bam
513
bigWig
471
tsv
46
fastq
30
bed narrowPeak
25
bigBed narrowPeak
13
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
582
Homo sapiens
Biosample type
546
tissue
in vitro differentiated cells
37
primary cell
Organ
942
pancreas
773
liver
583
connective tissue
500
epithelium
489
adipose tissue
352
kidney
349
heart
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
8
embryo
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
583
AMP
Genome assembly (visualization)
515
hg19
512
GRCh38
Lab
583
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
583 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
+ See 4 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 6 more…
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