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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
52
total RNA-seq
37
ATAC-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
206
bam
170
bigWig
140
fastq
127
bed narrowPeak
50
tsv
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
4
bedpe bed3+
4
hic
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
257
Homo sapiens
Biosample type
2673
tissue
881
primary cell
635
cell line
257
in vitro differentiated cells
6
stem cell
Organ
95
connective tissue
27
embryo
19
epithelium
15
liver
Project
257
AMP
Genome assembly (visualization)
206
hg19
181
GRCh38
4
hg18
Lab
250
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
44
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
pCHi-C
month_released!
May, 2021
BIOSAMPLE
ASSAY
257 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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