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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
RRBS
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
July, 2019
2
March, 2020
1
October, 2019
Available data
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
67
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
50
Homo sapiens
Biosample type
45
tissue
5
primary cell
Organ
256
pancreas
208
kidney
207
epithelium
139
heart
107
liver
92
bone element
87
connective tissue
50
eye
50
vasculature
49
blood vessel
47
adipose tissue
41
brain
39
artery
38
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
2
vein
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
50
AMP
Genome assembly (visualization)
35
GRCh38
6
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
pCHi-C
files.file_type!
bam
BIOSAMPLE
ASSAY
50 results
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Clear Filters
ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
tissue
coronary artery
35
1
aorta
4
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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