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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
490
ChIP-seq
257
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
490
DNA binding
286
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
281
histone modification
280
histone
201
narrow histone mark
187
control
79
broad histone mark
24
transcription factor
3
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
229
August, 2021
193
May, 2020
191
October, 2019
120
July, 2018
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
40
November, 2019
39
May, 2021
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
20
March, 2020
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1907
bam
1732
bigWig
1056
tsv
944
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2148
Homo sapiens
Biosample type
2151
tissue
962
primary cell
372
in vitro differentiated cells
301
cell line
6
stem cell
Organ
536
connective tissue
477
adipose tissue
442
pancreas
311
liver
212
kidney
182
heart
158
bone element
147
brain
70
blood vessel
70
vasculature
49
eye
48
artery
43
musculature of body
38
limb
19
lung
17
nerve
16
skeleton
15
epithelium
11
spleen
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2055
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1264
GRCh38
1262
hg19
Lab
1840
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
assay_title!
pCHi-C
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
2151 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
71
68
7
3
1
4
adipose tissue
382
1
2
3
liver
167
107
20
1
3
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
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