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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
67
ChIP-seq
6
WGBS
4
ATAC-seq
3
small RNA-seq
pCHi-C
1
RNA microarray
Assay category
401
Transcription
67
DNA binding
6
DNA methylation
4
DNA accessibility
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
55
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
Available data
442
bam
425
bigWig
400
tsv
43
fastq
13
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
478
Homo sapiens
Biosample type
477
tissue
2
primary cell
Organ
854
pancreas
651
connective tissue
479
adipose tissue
448
epithelium
430
liver
256
heart
248
kidney
158
bone element
157
brain
152
vasculature
150
blood vessel
116
artery
51
eye
48
musculature of body
38
limb
37
embryo
19
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
11
spleen
9
vein
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
479
AMP
Genome assembly (visualization)
416
hg19
415
GRCh38
Lab
479
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
479 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
3
2
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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