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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
STARR-seq
4
ChIP-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
10
Transcription
4
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
4
control
Date released
17
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
19
Homo sapiens
Biosample type
15
cell line
4
tissue
Organ
15
liver
4
pancreas
Project
19
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
1013
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
106
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
assay_title!
pCHi-C
STARR-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
19 results
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total RNA-seq
ChIP-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
9
4
1
1
tissue
islet of Langerhans
1
2
1
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