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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
single cell RNA-seq
83
ATAC-seq
56
snATAC-seq
42
total RNA-seq
20
ChIP-seq
pCHi-C
10
RRBS
3
Hi-C
2
DNase-seq
1
DNAme array
Assay category
141
DNA accessibility
129
Transcription
20
DNA binding
11
DNA methylation
3
3D chromatin structure
Target of assay
13
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
57
May, 2020
54
May, 2022
51
February, 2023
40
September, 2020
39
February, 2021
19
May, 2021
11
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
1
August, 2017
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
414
bam
227
bed narrowPeak
162
tsv
151
fastq
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
304
Homo sapiens
Biosample type
849
tissue
304
primary cell
129
in vitro differentiated cells
98
cell line
3
stem cell
Organ
175
epithelium
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
vein
5
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
brain
Project
172
HPAP
123
AMP
8
T1D
1
ITG
Genome assembly (visualization)
28
hg19
17
GRCh38
Lab
172
Klaus Kaestner, Upenn
123
AMP-T2D consortium
8
Kyle Gaulton, UCSD
1
ITG
Audit category:
28
audit script error
15
inconsistent ontology term
assay_title!
pCHi-C
files.file_type!
bigWig
organ_slims!
pancreas
BIOSAMPLE
ASSAY
304 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
total RNA-seq
ChIP-seq
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
CD4-positive, alpha-beta memory T cell
22
monocyte
13
1
1
1
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