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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
5
STARR-seq
4
ChIP-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
9
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
4
control
Date released
20
August, 2021
Available data
14
bed narrowPeak
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
20
Homo sapiens
Biosample type
20
cell line
Organ
17
liver
pancreas
2
kidney
Project
20
AMP
Genome assembly (visualization)
1
hg19
Lab
901
AMP-T2D consortium
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
55
Kyle Gaulton, UCSD
47
KPMP
20
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_title!
pCHi-C
files.file_type!
bigWig
organ_slims!
pancreas
BIOSAMPLE
ASSAY
20 results
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total RNA-seq
STARR-seq
ChIP-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
4
1
1
HEK293T
2
Synthesized DNA
1
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