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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
4
WGBS
3
total RNA-seq
2
ATAC-seq
pCHi-C
1
RNA microarray
Assay category
54
DNA binding
4
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
2
February, 2020
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2019
Available data
442
bam
bigWig
400
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
63
Homo sapiens
Biosample type
64
tissue
Organ
322
pancreas
223
epithelium
221
kidney
166
heart
166
liver
109
connective tissue
100
bone element
80
vasculature
79
blood vessel
64
adipose tissue
62
brain
56
artery
51
eye
31
limb
27
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
64
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
pCHi-C
files.file_type!
bigWig
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ChIP-seq
WGBS
total RNA-seq
ATAC-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
adipose tissue(adipose white tissue)
1
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