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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
total RNA-seq
134
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
DNA binding
356
Transcription
101
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
105
August, 2017
76
February, 2023
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2018
41
September, 2020
24
May, 2022
18
November, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
December, 2018
1
January, 2018
1
March, 2019
Available data
1668
bam
1635
bigWig
1440
tsv
480
fastq
470
bed narrowPeak
238
bigBed narrowPeak
212
bed bed3+
207
bed broadPeak
205
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
1
bedpe
1
tar
1
vcf
Organism
480
Homo sapiens
Biosample type
315
primary cell
157
tissue
in vitro differentiated cells
7
cell line
1
stem cell
Organ
324
pancreas
185
epithelium
13
liver
9
connective tissue
6
adipose tissue
4
spleen
3
brain
2
musculature of body
Project
311
AMP
169
HPAP
Genome assembly (visualization)
288
hg19
283
GRCh38
1
hg18
Lab
285
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
7
inconsistent ontology term
assay_title!
pCHi-C
biosample_type!
in vitro differentiated cells
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
primary cell
pancreatic alpha cell
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
21
12
10
exocrine cell
39
pancreatic acinar cell
4
9
5
+ See 14 more…
tissue
islet of Langerhans
97
6
20
1
1
body of pancreas
4
2
2
liver
1
2
1
spleen
1
2
1
adipose tissue
3
+ See 7 more…
cell line
HepG2
5
1
1
stem cell
hESC
1
See all biosamples
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