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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
3
WGBS
2
ATAC-seq
1
DNase-seq
pCHi-C
Assay category
45
DNA binding
3
DNA accessibility
3
DNA methylation
Target of assay
20
control
17
transcription factor
8
histone
8
histone modification
5
RNA binding protein
4
broad histone mark
4
narrow histone mark
Date released
26
August, 2017
23
October, 2018
1
November, 2018
1
October, 2017
Available data
442
bam
425
bigWig
400
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
51
Homo sapiens
Biosample type
51
tissue
Organ
539
liver
483
pancreas
264
epithelium
131
brain
122
connective tissue
60
blood
60
bodily fluid
51
adipose tissue
27
embryo
24
spleen
17
musculature of body
12
vasculature
9
blood vessel
6
artery
6
heart
1
pituitary gland
Project
51
AMP
Genome assembly (visualization)
23
GRCh38
22
hg19
Lab
51
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
8
adipose tissue
2
3
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