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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
8
single cell RNA-seq
1
MPRA
Assay category
67
Transcription
DNA accessibility
Date released
84
February, 2021
57
August, 2021
6
May, 2022
4
February, 2023
1
October, 2022
Available data
3002
bam
2819
bigWig
1546
tsv
1325
bed narrowPeak
1255
fastq
801
bigBed narrowPeak
398
tagAlign
152
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
62
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
17
bedpe bed3+
5
hdf5
3
csv
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
151
Homo sapiens
Biosample type
151
tissue
1
cell line
Organ
88
bone element
57
kidney
6
pancreas
4
skeleton
Project
152
AMP
Lab
89
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
audit script error
assay_title!
pCHi-C
assay_slims!
DNA accessibility
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
152 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
tissue
bone element
84
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
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cell line
MIN6
1
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