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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
114
ChIP-seq
52
single cell RNA-seq
41
ATAC-seq
21
snATAC-seq
Assay category
268
DNA accessibility
114
DNA binding
52
Transcription
DNA methylation
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
93
May, 2022
70
November, 2017
41
August, 2017
19
September, 2020
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3373
bam
3152
bigWig
1817
bed narrowPeak
1563
tsv
1336
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
hic
20
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
428
Homo sapiens
Biosample type
213
tissue
161
primary cell
59
cell line
1
in vitro differentiated cells
Organ
78
kidney
63
liver
61
epithelium
60
pancreas
47
brain
46
musculature of body
36
limb
30
heart
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
322
AMP
112
HPAP
Genome assembly (visualization)
298
hg19
282
GRCh38
Lab
320
AMP-T2D consortium
112
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
pCHi-C
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
434 results
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DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
skeletal muscle myoblast
1
13
pancreatic beta cell
13
endothelial cell of umbilical vein
2
2
+ See 22 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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