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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
41
ChIP-seq
35
ATAC-seq
3
Hi-C
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
41
DNA binding
35
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
4
July, 2019
3
February, 2020
2
March, 2020
1
April, 2019
1
October, 2019
Available data
224
bigWig
bam
191
bed narrowPeak
165
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
179
Homo sapiens
Biosample type
178
tissue
1
primary cell
Organ
256
pancreas
207
epithelium
179
heart
107
liver
92
bone element
87
connective tissue
66
kidney
50
eye
50
vasculature
49
blood vessel
47
adipose tissue
41
brain
39
artery
38
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
2
vein
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
179
AMP
Genome assembly (visualization)
75
GRCh38
6
hg19
Lab
139
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assay_title!
pCHi-C
lab.title!
Katalin Susztak, Upenn
files.file_type!
bam
BIOSAMPLE
ASSAY
179 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
RRBS
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
2
heart right ventricle
17
1
right cardiac atrium
18
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primary cell
cardiac fibroblast
1
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