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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
5
single cell RNA-seq
4
total RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
9
Transcription
4
DNA accessibility
Date released
89
February, 2021
August, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
3138
bam
2902
bigWig
1579
bed narrowPeak
1350
tsv
1333
fastq
1042
bigBed narrowPeak
322
bed broadPeak
290
tagAlign
285
bigBed broadPeak
264
bed bed3+
153
zippedFastqFolder
98
txt
36
bed bedMethyl
36
bigBed bedMethyl
21
hic
18
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
Organism
97
Homo sapiens
Biosample type
94
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
5
kidney
4
skeleton
1
musculature of body
Project
98
AMP
Genome assembly (visualization)
4
hg19
Lab
95
AMP-T2D consortium
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
assay_title!
pCHi-C
lab.title!
Kyle Gaulton, UCSD
month_released!
August, 2021
BIOSAMPLE
ASSAY
98 results
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RNA microarray
single cell RNA-seq
total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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