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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
25
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
4
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
68
bigWig
60
bed narrowPeak
57
bam
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
48
Homo sapiens
Biosample type
43
tissue
5
primary cell
Organ
815
pancreas
649
connective tissue
479
adipose tissue
430
liver
415
epithelium
296
heart
248
kidney
158
bone element
157
brain
152
vasculature
150
blood vessel
116
artery
51
eye
48
musculature of body
38
limb
37
embryo
19
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
11
spleen
9
vein
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
48
AMP
Genome assembly (visualization)
26
hg19
7
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
pCHi-C
month_released!
April, 2018
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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