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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
9
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
2
February, 2020
2
March, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
hic
1
txt
Organism
93
Homo sapiens
Biosample type
79
tissue
14
primary cell
Organ
899
pancreas
786
liver
677
connective tissue
489
adipose tissue
485
epithelium
387
heart
351
kidney
284
brain
232
vasculature
226
blood vessel
158
bone element
141
artery
122
limb
93
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
93
AMP
Genome assembly (visualization)
71
hg19
53
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
month_released!
April, 2018
files.file_type!
hic
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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