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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
33
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
10
July, 2019
6
May, 2019
4
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
89
Homo sapiens
Biosample type
77
tissue
12
primary cell
Organ
853
pancreas
680
liver
642
connective tissue
465
adipose tissue
461
epithelium
370
heart
340
kidney
253
brain
213
vasculature
208
blood vessel
158
bone element
132
artery
105
limb
89
musculature of body
63
blood
63
bodily fluid
56
eye
32
nerve
30
embryo
20
vein
19
lung
18
ureter
16
skeleton
16
spleen
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
89
AMP
Genome assembly (visualization)
73
hg19
53
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
month_released!
April, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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