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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
53
ATAC-seq
47
WGBS
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
129
DNA accessibility
88
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
189
bigWig
186
bam
162
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
610
Homo sapiens
Biosample type
506
primary cell
96
tissue
11
cell line
2
stem cell
Organ
179
pancreas
149
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
317
HPAP
227
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
190
GRCh38
189
hg19
Lab
317
Klaus Kaestner, Upenn
219
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
8
inconsistent ontology term
assay_title!
pCHi-C
month_released!
August, 2020
award.project!
AMP
BIOSAMPLE
ASSAY
615 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
Langerhans cell
85
48
pancreatic alpha cell
42
24
31
1
pancreatic beta cell
11
14
16
1
exocrine cell
39
+ See 27 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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