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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
56
total RNA-seq
44
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
pCHi-C
Assay category
99
DNA binding
62
Transcription
54
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
July, 2019
6
August, 2021
5
June, 2019
3
February, 2020
3
March, 2020
3
November, 2017
Available data
171
bam
140
bigWig
127
bed narrowPeak
79
bigBed narrowPeak
62
tsv
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
218
Homo sapiens
Biosample type
125
tissue
66
cell line
27
primary cell
Organ
939
pancreas
778
liver
661
connective tissue
511
epithelium
477
adipose tissue
341
kidney
325
heart
266
brain
223
vasculature
218
blood vessel
158
bone element
138
artery
117
limb
85
musculature of body
69
blood
69
bodily fluid
56
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
218
AMP
Genome assembly (visualization)
179
GRCh38
150
hg19
Lab
218
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
pCHi-C
month_released!
July, 2019
BIOSAMPLE
ASSAY
218 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
aorta
13
1
4
1
ascending aorta
16
1
1
thoracic aorta
16
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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