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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
32
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
32
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
May, 2019
4
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
62
bigWig
54
bed narrowPeak
50
bam
46
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
88
Homo sapiens
Biosample type
74
tissue
14
primary cell
Organ
943
pancreas
788
liver
679
connective tissue
519
epithelium
489
adipose tissue
347
kidney
329
heart
256
brain
185
vasculature
179
blood vessel
158
bone element
136
artery
115
limb
88
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
88
AMP
Genome assembly (visualization)
67
hg19
48
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
month_released!
May, 2019
BIOSAMPLE
ASSAY
88 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
1
psoas muscle
2
2
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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