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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
24
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
5
control
Date released
26
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
2
March, 2020
May, 2019
2
May, 2022
1
January, 2018
Available data
15
tagAlign
14
bigWig
13
bed broadPeak
13
bed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bam
2
bedpe bed3+
2
fastq
2
hic
2
tsv
1
bed bed3+
1
txt
Organism
40
Homo sapiens
Biosample type
37
tissue
3
primary cell
Organ
309
pancreas
257
liver
229
epithelium
146
kidney
118
heart
113
connective tissue
92
bone element
65
adipose tissue
64
brain
51
eye
40
musculature of body
33
vasculature
31
blood vessel
24
limb
19
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
8
embryo
8
skeleton
8
spleen
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
40
AMP
Genome assembly (visualization)
67
hg19
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
pCHi-C
month_released!
May, 2019
assembly!
GRCh38
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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