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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
7
ATAC-seq
1
Hi-C
1
single cell RNA-seq
1
total RNA-seq
Assay category
13
DNA binding
7
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
128
February, 2021
89
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
11
February, 2023
9
March, 2020
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
22
bam
18
bed narrowPeak
13
bigWig
2
tsv
1
bedpe bed3+
1
fastq
1
hic
Organism
23
Homo sapiens
Biosample type
16
cell line
5
in vitro differentiated cells
1
primary cell
1
tissue
Organ
16
epithelium
16
pancreas
1
adipose tissue
1
connective tissue
Project
23
AMP
Genome assembly (visualization)
21
hg19
20
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
single cell RNA-seq
total RNA-seq
cell line
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
unclassified exocrine cell
1
tissue
adipose tissue(adipose white tissue)
1
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