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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
538
ChIP-seq
263
single cell RNA-seq
205
ATAC-seq
193
total RNA-seq
86
RNA microarray
83
snATAC-seq
pCHi-C
28
WGBS
18
DNase-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
205
DNA accessibility
Date released
64
August, 2021
58
February, 2023
55
May, 2020
13
October, 2019
11
May, 2023
2
March, 2019
1
July, 2019
1
October, 2017
Available data
99
bed narrowPeak
64
xls
12
tsv
3
bam
2
bigWig
2
fastq
1
bed broadPeak
Organism
205
Homo sapiens
Biosample type
138
tissue
67
primary cell
Organ
81
pancreas
75
kidney
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
3
brain
1
eye
1
pituitary gland
1
skin of body
Project
194
AMP
11
T1D
Genome assembly (visualization)
hg19
200
GRCh38
Lab
117
AMP-T2D consortium
75
Katalin Susztak, Upenn
11
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
6
inconsistent ontology term
assay_title!
pCHi-C
organ_slims!
epithelium
assembly!
hg19
BIOSAMPLE
ASSAY
205 results
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ATAC-seq
tissue
kidney
75
coronary artery
35
islet of Langerhans
26
cerebellum (Hemisphere)
1
posterior cingulate cortex
1
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
gabaergic neuron
3
glutamatergic neuron
3
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