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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
95
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
42
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
102
bam
86
bigWig
81
bed narrowPeak
80
bigBed narrowPeak
60
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
112
Homo sapiens
Biosample type
61
cell line
43
tissue
8
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
104
AMP
8
T1D
Genome assembly (visualization)
86
hg19
85
GRCh38
Lab
104
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
pCHi-C
organ_slims!
heart
BIOSAMPLE
ASSAY
112 results
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Clear Filters
ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
GM12878
60
1
tissue
tibial nerve
35
5
1
2
primary cell
peripheral blood mononuclear cell
8
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