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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
136
total RNA-seq
42
ATAC-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
183
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
28
December, 2017
26
February, 2021
16
February, 2023
8
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
276
bam
245
bigWig
129
tsv
125
fastq
118
bed narrowPeak
40
tagAlign
25
bed bed3+
7
bed bedgraph
5
bed bed3
4
bedpe bed3+
4
hic
3
bigBed narrowPeak
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
374
Homo sapiens
Biosample type
2352
tissue
1057
primary cell
374
in vitro differentiated cells
257
cell line
6
stem cell
Organ
96
connective tissue
29
embryo
24
epithelium
liver
3
pancreas
1
heart
Project
374
AMP
Genome assembly (visualization)
281
hg19
251
GRCh38
4
hg18
Lab
320
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
pCHi-C
organ_slims!
liver
BIOSAMPLE
ASSAY
374 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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