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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
197
DNA binding
34
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
173
histone
173
histone modification
113
narrow histone mark
60
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
16
July, 2019
October, 2017
12
February, 2020
2
November, 2018
1
February, 2023
Available data
226
bam
206
bigWig
191
bed narrowPeak
115
bigBed narrowPeak
104
tagAlign
38
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
24
tsv
5
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
258
Homo sapiens
Biosample type
247
tissue
11
primary cell
Organ
940
pancreas
788
liver
678
connective tissue
524
epithelium
488
adipose tissue
390
heart
352
kidney
268
brain
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
23
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
258
AMP
Genome assembly (visualization)
204
GRCh38
148
hg19
Lab
258
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
pCHi-C
organ_slims!
vasculature
month_released!
October, 2017
BIOSAMPLE
ASSAY
258 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
FAIRE-seq
RRBS
tissue
layer of hippocampus
23
brain
5
14
1
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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