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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
66
ChIP-seq
6
WGBS
3
small RNA-seq
2
ATAC-seq
pCHi-C
1
RNA microarray
Assay category
401
Transcription
66
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
386
February, 2021
54
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
January, 2018
1
May, 2023
1
October, 2019
Available data
442
bam
425
bigWig
400
tsv
43
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
475
Homo sapiens
Biosample type
474
tissue
2
primary cell
Organ
731
pancreas
604
connective tissue
476
adipose tissue
373
epithelium
347
liver
199
heart
169
kidney
150
bone element
102
vasculature
100
blood vessel
81
brain
67
artery
35
musculature of body
30
limb
24
eye
23
embryo
19
lung
16
nerve
15
blood
15
bodily fluid
10
spleen
9
vein
8
skeleton
4
gonad
4
ovary
2
pericardium
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
Project
476
AMP
Genome assembly (visualization)
413
GRCh38
413
hg19
Lab
476
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
476 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
ATAC-seq
RNA microarray
tissue
adipose tissue
382
1
3
2
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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