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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
pCHi-C
Assay category
80
DNA binding
11
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
24
November, 2018
8
January, 2021
1
January, 2018
1
October, 2017
Available data
84
bam
84
fastq
71
bigWig
68
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
93
Homo sapiens
Biosample type
61
cell line
24
tissue
8
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
352
kidney
350
heart
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
85
AMP
8
T1D
Genome assembly (visualization)
70
GRCh38
69
hg19
Lab
85
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
cell line
GM12878
60
1
tissue
spleen
20
1
2
1
primary cell
peripheral blood mononuclear cell
8
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