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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
pCHi-C
Assay category
218
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
16
July, 2019
15
October, 2017
12
February, 2020
Available data
208
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
24
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
247
Homo sapiens
Biosample type
231
tissue
16
primary cell
Organ
772
pancreas
759
liver
645
connective tissue
481
adipose tissue
401
epithelium
273
heart
247
brain
189
kidney
177
vasculature
173
blood vessel
146
bone element
92
artery
78
limb
60
blood
60
bodily fluid
60
musculature of body
40
nerve
37
embryo
25
eye
22
spleen
19
vein
9
lung
4
gonad
4
ovary
4
skeleton
2
pericardium
1
lymph node
1
pituitary gland
1
spinal cord
Project
247
AMP
Genome assembly (visualization)
183
GRCh38
140
hg19
Lab
247
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
pCHi-C
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 69 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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