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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
pCHi-C
1
FAIRE-seq
Assay category
101
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
18
July, 2019
18
May, 2019
14
October, 2017
12
February, 2020
12
October, 2019
2
November, 2018
1
February, 2023
Available data
138
bam
116
bigWig
97
bed narrowPeak
94
bigBed narrowPeak
64
tagAlign
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
24
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
167
Homo sapiens
Biosample type
149
tissue
18
primary cell
Organ
872
pancreas
728
liver
646
connective tissue
477
adipose tissue
475
epithelium
337
kidney
325
heart
209
vasculature
204
blood vessel
167
brain
158
bone element
135
artery
107
limb
82
musculature of body
68
blood
68
bodily fluid
54
eye
35
nerve
29
embryo
22
spleen
19
lung
18
ureter
16
skeleton
16
vein
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
167
AMP
Genome assembly (visualization)
110
GRCh38
72
hg19
Lab
167
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
pCHi-C
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
16
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 28 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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