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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
14
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
1
GRO-seq
pCHi-C
Assay category
23
Transcription
22
DNA binding
10
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
19
April, 2020
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
Available data
36
bam
29
bigWig
27
fastq
14
bed narrowPeak
14
tsv
3
bed bed3+
Organism
55
Homo sapiens
Biosample type
29
in vitro differentiated cells
19
tissue
8
cell line
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
352
kidney
350
heart
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
37
AMP
19
LungMap
Genome assembly (visualization)
29
GRCh38
29
hg19
1
hg18
Lab
37
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
lung
10
9
cell line
H1-hESC
8
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