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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
32
DNA binding
8
Transcription
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
11
June, 2019
5
July, 2019
4
March, 2020
2
May, 2022
1
February, 2020
1
January, 2018
Available data
29
bigWig
22
bed narrowPeak
17
bam
15
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
50
Homo sapiens
Biosample type
36
tissue
14
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
50
AMP
Genome assembly (visualization)
35
hg19
15
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
organ_slims!
limb
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
psoas muscle
2
2
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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