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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
1
WGBS
pCHi-C
Assay category
70
DNA binding
12
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
17
control
Date released
73
October, 2019
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
82
bam
60
bed narrowPeak
59
bigWig
52
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
94
Homo sapiens
Biosample type
94
tissue
Organ
941
pancreas
786
liver
661
connective tissue
504
epithelium
488
adipose tissue
355
heart
271
kidney
254
brain
228
vasculature
224
blood vessel
158
bone element
139
artery
90
limb
69
blood
69
bodily fluid
52
musculature of body
50
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
94
AMP
Genome assembly (visualization)
64
GRCh38
64
hg19
Lab
94
AMP-T2D consortium
assay_title!
pCHi-C
month_released!
June, 2019
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
5
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