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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
8
snATAC-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
77
DNA binding
10
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
16
histone
16
histone modification
10
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
7
narrow histone mark
Date released
27
December, 2018
19
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
80
bam
70
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
60
fastq
4
bed broadPeak
4
bigBed broadPeak
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
89
Homo sapiens
Biosample type
61
cell line
28
primary cell
Organ
916
pancreas
776
liver
653
connective tissue
503
epithelium
483
adipose tissue
360
heart
274
kidney
249
brain
222
vasculature
218
blood vessel
158
bone element
137
artery
86
limb
69
blood
69
bodily fluid
61
musculature of body
53
eye
41
nerve
34
embryo
23
spleen
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
81
AMP
8
T1D
Genome assembly (visualization)
70
hg19
64
GRCh38
Lab
81
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
assay_title!
pCHi-C
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
60
1
primary cell
endothelial cell of umbilical vein
17
2
1
peripheral blood mononuclear cell
8
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