Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
31
ChIP-seq
4
ATAC-seq
4
DNase-seq
3
small RNA-seq
2
WGBS
1
FAIRE-seq
Assay category
398
Transcription
31
DNA binding
9
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
17
August, 2017
16
October, 2019
12
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
Available data
462
bam
440
bigWig
400
tsv
43
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
440
Homo sapiens
Biosample type
423
tissue
17
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
440
AMP
Genome assembly (visualization)
438
hg19
434
GRCh38
Lab
440
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
440 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
endothelial cell of umbilical vein
12
2
1
mesenchymal stem cell of adipose
1
1
See all biosamples
Download