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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
4
WGBS
3
total RNA-seq
2
ATAC-seq
2
Hi-C
pCHi-C
1
RNA microarray
Assay category
59
DNA binding
4
DNA methylation
3
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
33
histone
33
histone modification
26
control
22
broad histone mark
11
narrow histone mark
Date released
40
August, 2017
18
October, 2018
6
October, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
462
bam
bigWig
400
tsv
43
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
70
Homo sapiens
Biosample type
64
tissue
7
primary cell
Organ
322
pancreas
223
epithelium
221
kidney
166
heart
166
liver
109
connective tissue
100
bone element
80
vasculature
79
blood vessel
64
adipose tissue
62
brain
56
artery
51
eye
31
limb
27
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
71
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
pCHi-C
files.file_type!
bigWig
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
Hi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
adipose tissue(adipose white tissue)
1
primary cell
endothelial cell of umbilical vein
5
2
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