Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
41
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
pCHi-C
1
RNA microarray
Assay category
401
Transcription
41
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
423
bigWig
400
tsv
42
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
tagAlign
Organism
456
Homo sapiens
Biosample type
455
tissue
2
primary cell
Organ
794
pancreas
685
liver
601
connective tissue
457
adipose tissue
431
epithelium
322
kidney
288
heart
164
vasculature
159
blood vessel
158
bone element
121
artery
97
brain
73
limb
68
blood
68
bodily fluid
62
musculature of body
54
eye
25
embryo
19
lung
19
nerve
18
spleen
18
ureter
16
skeleton
7
vein
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
457
AMP
Genome assembly (visualization)
424
hg19
423
GRCh38
Lab
457
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
457 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
See all biosamples
Download