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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
pCHi-C
Assay category
22
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
7
October, 2017
5
July, 2019
3
October, 2019
1
February, 2023
Available data
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
41
Homo sapiens
Biosample type
37
tissue
4
primary cell
Organ
251
pancreas
208
kidney
204
epithelium
179
heart
107
liver
92
bone element
87
connective tissue
50
eye
50
vasculature
49
blood vessel
47
adipose tissue
41
brain
39
artery
38
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
2
vein
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
41
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
pCHi-C
target.investigated_as!
nucleotide modification
files.file_type!
bam
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
tissue
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
caudate nucleus
1
1
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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