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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
343
ChIP-seq
Assay category
343
DNA binding
Target of assay
666
histone modification
665
histone
455
transcription factor
343
narrow histone mark
322
broad histone mark
270
control
93
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
50
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
15
May, 2024
11
October, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
August, 2021
2
December, 2017
2
October, 2017
1
May, 2021
Available data
287
bigWig
284
bed narrowPeak
260
bam
118
bigBed narrowPeak
115
tagAlign
36
fastq
21
bed broadPeak
6
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
341
Homo sapiens
Biosample type
324
tissue
115
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
53
liver
41
pancreas
38
heart
18
blood vessel
18
vasculature
15
limb
13
connective tissue
12
adipose tissue
10
kidney
9
musculature of body
8
nerve
6
artery
6
epithelium
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
339
AMP
4
T1D
Genome assembly (visualization)
267
GRCh38
258
hg19
Lab
326
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
343 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
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cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
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